- State Key Lab for Superconductivity
- State Key Lab for Surface Physics
- State Key Lab for Magnetism & Magnetic Materials
- CAS Key Lab for Optical Physics
- CAS Key Lab for Advanced Materials & Electron Microscopy
- CAS Key Lab for Nanoscale Physics & Devices
- CAS Key Lab for Physics under Extreme Conditions
- CAS Key Lab of Condensed Matter Theory & Materials Computation
- Lab of Soft Matter and Biological Physics
- Lab of Solid State Quantum Information & Computation
- CAS Key Lab of Frontier Research & Renewable Energy
- Technical Department
- HuaiRou Research Department
- Pearl River Delta Research Department
- Yangtze River Delta Research Department
- Beijing Spallation Neutron Source Center for Targets & Instruments
- Quantum Computation Research Center
- Center for Applied Physics